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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
single cell RNA-seq
47
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
9
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
269
DNA binding
260
DNA accessibility
247
Transcription
57
DNA methylation
6
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
44
June, 2019
33
October, 2019
25
July, 2019
19
September, 2020
9
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
Available data
502
bigWig
496
bam
286
bed narrowPeak
254
fastq
168
tsv
101
zippedFastqFolder
100
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
856
Homo sapiens
Biosample type
2513
tissue
856
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
332
epithelium
269
pancreas
36
kidney
36
vasculature
35
connective tissue
30
blood vessel
21
vein
18
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
442
AMP
209
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
512
hg19
425
GRCh38
Lab
407
AMP-T2D consortium
239
Kyle Gaulton, UCSD
209
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
audit.ERROR.category!
audit script error
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
856 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
pancreatic beta cell
13
21
23
16
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
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