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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
904
ChIP-seq
260
ATAC-seq
178
DNase-seq
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1047
Transcription
904
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
64
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
November, 2018
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
Available data
1898
bam
1763
bigWig
981
bed narrowPeak
965
tsv
558
bigBed narrowPeak
368
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
143
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2581
Homo sapiens
Biosample type
2590
tissue
870
primary cell
660
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
498
pancreas
488
adipose tissue
360
liver
265
brain
233
kidney
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
80
musculature of body
71
artery
56
eye
43
nerve
22
spleen
18
ureter
16
skeleton
14
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2549
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1850
GRCh38
1745
hg19
Lab
2305
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
audit.ERROR.category!
audit script error
target.investigated_as!
other context
BIOSAMPLE
ASSAY
2590 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
kidney
49
27
75
13
6
1
1
1
bone element
84
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