Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
233
total RNA-seq
186
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
14
pCHi-C
9
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
266
DNA accessibility
253
DNA binding
234
Transcription
56
DNA methylation
9
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
26
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
139
May, 2020
101
May, 2022
82
February, 2023
72
September, 2018
59
August, 2017
33
February, 2021
32
October, 2019
25
June, 2019
19
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
Available data
464
bigWig
451
bam
281
fastq
263
bed narrowPeak
149
tsv
101
zippedFastqFolder
100
tagAlign
81
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
27
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
1
tar
Organism
832
Homo sapiens
Biosample type
1956
tissue
832
primary cell
570
cell line
186
in vitro differentiated cells
9
stem cell
Organ
327
epithelium
272
pancreas
36
vasculature
31
blood vessel
28
kidney
22
vein
18
brain
connective tissue
13
liver
8
blood
8
bodily fluid
7
heart
6
musculature of body
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
394
AMP
239
HPAP
198
T1D
1
ITG
Genome assembly (visualization)
474
hg19
389
GRCh38
Lab
359
AMP-T2D consortium
239
Klaus Kaestner, Upenn
233
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2020
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
832 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 62 more…
See all biosamples
Download