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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
26
October, 2019
4
May, 2019
3
July, 2019
2
February, 2020
2
June, 2019
Available data
97
bam
80
bigWig
69
bed narrowPeak
56
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
134
Homo sapiens
Biosample type
70
tissue
62
cell line
2
primary cell
Organ
847
pancreas
640
connective tissue
474
adipose tissue
451
liver
445
epithelium
283
heart
280
brain
280
kidney
221
vasculature
216
blood vessel
159
bone element
134
artery
122
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
134
AMP-T2D consortium
assay_title!
single cell RNA-seq
audit.ERROR.category!
inconsistent replicate
target.investigated_as!
chromatin remodeller
transcription factor
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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