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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
Assay category
54
DNA binding
Target of assay
29
histone
29
histone modification
25
transcription factor
15
narrow histone mark
14
broad histone mark
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
25
August, 2017
11
September, 2018
10
November, 2017
4
October, 2017
3
November, 2018
1
December, 2017
Available data
68
fastq
67
bam
65
bigWig
27
bed narrowPeak
15
bigBed narrowPeak
bed bed3+
4
tagAlign
2
bed broadPeak
Organism
54
Homo sapiens
Biosample type
23
primary cell
13
cell line
12
tissue
6
in vitro differentiated cells
Organ
44
pancreas
epithelium
13
connective tissue
13
liver
8
adipose tissue
4
brain
1
embryo
Project
54
AMP
Genome assembly (visualization)
51
hg19
44
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
54
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
assay_title!
single cell RNA-seq
files.file_type!
bed bed3
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
23
cell line
HepG2
13
tissue
white adipose tissue
8
brain
4
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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