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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
747
ChIP-seq
239
ATAC-seq
174
DNase-seq
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
18
snATAC-seq
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
874
Transcription
747
DNA binding
435
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
553
histone
553
histone modification
278
narrow histone mark
275
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
539
February, 2021
236
October, 2019
226
August, 2017
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
73
October, 2018
69
July, 2019
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
25
May, 2022
24
February, 2020
23
October, 2017
19
November, 2018
12
May, 2023
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1608
bam
1496
bigWig
866
bed narrowPeak
813
tsv
507
bigBed narrowPeak
283
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
144
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2214
Homo sapiens
Biosample type
2222
tissue
882
primary cell
360
in vitro differentiated cells
261
cell line
8
stem cell
Organ
547
connective tissue
494
pancreas
488
adipose tissue
liver
265
brain
235
kidney
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2191
AMP
31
T1D
Genome assembly (visualization)
1610
GRCh38
1476
hg19
Lab
1987
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
audit.WARNING.category!
inconsistent control read length
month_released!
April, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
2222 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
13
6
1
1
1
bone element
84
bone tissue
58
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