Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
single cell RNA-seq
151
total RNA-seq
120
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
280
DNA accessibility
153
Transcription
120
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
152
histone
152
histone modification
78
broad histone mark
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
101
May, 2022
88
February, 2023
57
September, 2018
44
June, 2019
43
May, 2021
37
August, 2017
36
February, 2021
28
July, 2019
25
October, 2019
19
September, 2020
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
Available data
266
bam
261
bigWig
241
fastq
147
bed narrowPeak
101
zippedFastqFolder
83
bigBed narrowPeak
74
tsv
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
622
Homo sapiens
Biosample type
2243
tissue
628
cell line
622
primary cell
337
in vitro differentiated cells
9
stem cell
Organ
301
epithelium
241
pancreas
31
kidney
30
connective tissue
29
vasculature
24
blood vessel
16
vein
15
brain
12
liver
11
heart
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
382
AMP
239
HPAP
T1D
1
ITG
Genome assembly (visualization)
276
hg19
194
GRCh38
Lab
357
AMP-T2D consortium
239
Klaus Kaestner, Upenn
25
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
single cell RNA-seq
audit.WARNING.category!
inconsistent control run_type
award.project!
T1D
organ_slims!
ovary
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
622 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
52
9
31
1
pancreatic beta cell
23
21
9
16
1
Langerhans cell
48
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
23
+ See 72 more…
See all biosamples
Download