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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
single cell RNA-seq
85
ChIP-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
197
Transcription
126
DNA accessibility
85
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
101
May, 2022
99
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
7
August, 2020
March, 2020
5
March, 2023
3
October, 2022
Available data
191
bigWig
181
bam
135
fastq
102
tsv
101
zippedFastqFolder
85
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
477
Homo sapiens
Biosample type
444
primary cell
27
tissue
8
cell line
2
stem cell
Organ
179
pancreas
153
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
239
HPAP
237
T1D
LungMap
4
community
1
ITG
Genome assembly (visualization)
192
GRCh38
184
hg19
Lab
239
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
6
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
AMP
LungMap
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
481 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
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tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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