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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
single cell RNA-seq
86
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
Assay category
197
Transcription
136
DNA accessibility
86
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
101
May, 2022
94
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
4
March, 2020
3
March, 2023
October, 2022
Available data
192
bigWig
182
bam
135
fastq
102
tsv
101
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
1
hic
Organism
481
Homo sapiens
Biosample type
441
primary cell
41
tissue
cell line
2
stem cell
Organ
179
pancreas
149
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
236
HPAP
235
T1D
10
LungMap
2
community
1
ITG
Genome assembly (visualization)
193
GRCh38
182
hg19
Lab
236
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
AMP
biosample_type!
cell line
month_released!
December, 2018
October, 2022
BIOSAMPLE
ASSAY
484 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
Langerhans cell
48
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 37 more…
tissue
islet of Langerhans
7
2
6
11
lung
10
pancreas
4
thymus
1
stem cell
SB Ad3.1
1
1
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