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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
114
total RNA-seq
86
ChIP-seq
74
snATAC-seq
49
ATAC-seq
47
WGBS
17
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
Assay category
123
DNA accessibility
116
Transcription
86
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
101
May, 2022
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
10
April, 2020
7
August, 2020
4
March, 2020
3
March, 2023
October, 2022
Available data
192
bigWig
182
bam
102
tsv
101
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
59
fastq
1
hic
Organism
387
Homo sapiens
Biosample type
365
primary cell
23
tissue
cell line
2
stem cell
Organ
124
pancreas
112
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
217
T1D
160
HPAP
10
LungMap
2
community
1
ITG
Genome assembly (visualization)
193
GRCh38
182
hg19
Lab
213
Kyle Gaulton, UCSD
160
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
assay_title!
single cell RNA-seq
award.project!
AMP
biosample_type!
cell line
month_released!
February, 2023
October, 2022
BIOSAMPLE
ASSAY
390 results
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total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
primary cell
monocyte
53
84
1
pancreatic alpha cell
15
29
31
Langerhans cell
48
pancreatic beta cell
1
16
16
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
lung
10
islet of Langerhans
2
2
4
pancreas
4
thymus
1
stem cell
SB Ad3.1
1
1
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