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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
18
ChIP-seq
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
18
DNA binding
3
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
18
control
Date released
35
February, 2023
11
May, 2019
10
February, 2021
5
October, 2019
3
February, 2020
2
March, 2020
1
July, 2019
Available data
153
bam
bigWig
112
bed narrowPeak
62
bigBed narrowPeak
60
tsv
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
67
Homo sapiens
Biosample type
57
tissue
10
cell line
primary cell
Organ
165
liver
151
kidney
141
pancreas
107
connective tissue
100
bone element
73
heart
67
blood vessel
67
vasculature
66
adipose tissue
63
brain
54
artery
53
eye
48
epithelium
31
limb
24
musculature of body
16
skeleton
12
nerve
11
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
43
GRCh38
9
hg19
Lab
67
AMP-T2D consortium
assay_title!
single cell RNA-seq
award.project!
T1D
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
1
1
1
ascending aorta
3
1
thoracic aorta
4
cell line
smooth muscle cell of the coronary artery
8
2
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