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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
190
ChIP-seq
single cell RNA-seq
147
total RNA-seq
48
snATAC-seq
47
WGBS
28
DNase-seq
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
270
DNA accessibility
190
DNA binding
149
Transcription
57
DNA methylation
10
3D chromatin structure
Target of assay
151
histone
151
histone modification
78
broad histone mark
73
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
May, 2021
47
June, 2019
36
February, 2021
34
October, 2019
23
July, 2019
19
September, 2020
9
November, 2017
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
317
bam
316
bigWig
274
fastq
205
bed narrowPeak
103
bigBed narrowPeak
101
zippedFastqFolder
70
tsv
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
677
Homo sapiens
Biosample type
2346
tissue
677
primary cell
587
cell line
391
in vitro differentiated cells
10
stem cell
Organ
329
epithelium
265
pancreas
37
vasculature
36
kidney
34
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
444
AMP
232
HPAP
T1D
1
ITG
Genome assembly (visualization)
338
hg19
239
GRCh38
Lab
409
AMP-T2D consortium
232
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
award.project!
T1D
month_released!
August, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
677 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
30
13
52
31
1
pancreatic beta cell
21
13
21
16
1
Langerhans cell
48
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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