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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
ATAC-seq
single cell RNA-seq
163
ChIP-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
273
DNA accessibility
163
DNA binding
153
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
52
May, 2021
47
June, 2019
46
August, 2017
36
February, 2021
31
October, 2019
28
July, 2019
19
September, 2020
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
319
bigWig
300
bam
258
fastq
211
bed narrowPeak
109
bigBed narrowPeak
101
zippedFastqFolder
74
tsv
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
658
Homo sapiens
Biosample type
2379
tissue
658
primary cell
570
cell line
355
in vitro differentiated cells
9
stem cell
Organ
308
epithelium
253
pancreas
33
kidney
33
vasculature
31
connective tissue
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
425
AMP
232
HPAP
T1D
1
ITG
Genome assembly (visualization)
341
hg19
249
GRCh38
Lab
393
AMP-T2D consortium
232
Klaus Kaestner, Upenn
32
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
award.project!
T1D
month_released!
August, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
658 results
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ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
30
7
52
31
1
pancreatic beta cell
21
7
21
16
1
Langerhans cell
48
exocrine cell
39
CD8-positive, alpha-beta T cell
2
30
2
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