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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
single cell RNA-seq
Assay category
56
Transcription
45
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
24
October, 2019
5
May, 2019
3
July, 2019
2
February, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
Organism
135
Homo sapiens
Biosample type
67
tissue
66
cell line
2
primary cell
Organ
811
pancreas
727
liver
669
connective tissue
488
adipose tissue
428
epithelium
270
heart
236
brain
213
vasculature
212
kidney
211
blood vessel
158
bone element
135
artery
86
limb
61
blood
61
bodily fluid
57
eye
49
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
135
AMP-T2D consortium
assay_title!
single cell RNA-seq
award.project!
T1D
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
135 results
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total RNA-seq
ATAC-seq
ChIP-seq
tissue
coronary artery
1
36
5
tibial artery
1
1
23
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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