Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
DNase-seq
65
ChIP-seq
1
Hi-C
Assay category
155
DNA accessibility
65
DNA binding
1
3D chromatin structure
Target of assay
32
transcription factor
19
histone
19
histone modification
12
control
11
narrow histone mark
8
broad histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
691
February, 2021
411
August, 2017
406
November, 2017
296
May, 2020
246
May, 2021
245
October, 2019
213
August, 2021
186
June, 2019
181
February, 2023
166
May, 2022
120
July, 2018
113
May, 2019
100
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
61
November, 2019
57
March, 2020
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
September, 2020
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
220
bam
208
bed narrowPeak
208
bigBed narrowPeak
208
bigWig
155
bed bed3+
155
bed broadPeak
155
bigBed broadPeak
35
fastq
Organism
221
Homo sapiens
Biosample type
138
tissue
55
primary cell
28
cell line
Organ
81
kidney
43
musculature of body
35
heart
limb
30
brain
27
blood
27
bodily fluid
20
epithelium
18
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
4
pancreas
3
liver
2
artery
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
208
GRCh38
185
hg19
Lab
221
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
1
inconsistent control
assay_title!
single cell RNA-seq
award.project!
T1D
organ_slims!
limb
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
kidney
13
brain
12
renal cortex interstitium
11
renal pelvis
10
+ See 31 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
cell line
GM12878
27
HepG2
1
See all biosamples
Download