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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
8
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
15
DNA binding
8
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
697
February, 2021
411
August, 2017
406
November, 2017
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
213
August, 2021
181
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
61
November, 2019
57
March, 2020
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
12
May, 2023
11
November, 2020
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
17
fastq
15
bam
14
bigWig
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
1
hic
Organism
24
Homo sapiens
Biosample type
23
tissue
2
cell line
2
stem cell
1
primary cell
Organ
16
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
23
AMP
4
community
1
ITG
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
22
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
assay_title!
single cell RNA-seq
award.project!
T1D
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
See all biosamples
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