Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 1271total RNA-seq
  • 389ATAC-seq
  • single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 1289Transcription
  • 608DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 336control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 664February, 2021
  • 411August, 2017
  • 406November, 2017
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 120July, 2018
  • 120May, 2019
  • 105July, 2019
  • 102February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 76October, 2018
  • 72September, 2018
  • 65May, 2022
  • 61November, 2019
  • 57March, 2020
  • 53August, 2021
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 8January, 2018
  • 7December, 2019
  • 3March, 2019
  • 1August, 2018
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3100bam
  • 2847bigWig
  • 1647bed narrowPeak
  • 1275tsv
  • 1088fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 96txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3877Homo sapiens
Biosample type
  • 2420tissue
  • 617cell line
  • 457primary cell
  • 385in vitro differentiated cells
  • 8stem cell
Organ
  • 759liver
  • 675connective tissue
  • 675pancreas
  • 491adipose tissue
  • 300heart
  • 298epithelium
  • 283brain
  • 230vasculature
  • 224blood vessel
  • 158bone element
  • 157kidney
  • 139artery
  • 122limb
  • 95musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3887AMP
Genome assembly (visualization)
  • 2892hg19
  • 2747GRCh38
  • 5hg18
Lab
  • 3687AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 333inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_title!
  • single cell RNA-seq
BIOSAMPLE
ASSAY

3887 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans69284551411411
adipose tissue2382313
liver14516720213111
bone element84
bone tissue58
cell line
HepG236051211
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
CD8-positive, alpha-beta T cell3322
pancreatic beta cell13107
pancreatic alpha cell13106
naive thymus-derived CD4-positive, alpha-beta T cell2122
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego