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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
17
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
82
DNA accessibility
57
Transcription
17
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
control
Date released
601
February, 2021
369
May, 2021
361
August, 2017
317
May, 2020
254
October, 2019
210
June, 2019
198
February, 2023
166
May, 2022
161
August, 2021
120
July, 2018
105
July, 2019
97
May, 2019
76
November, 2017
73
December, 2017
72
September, 2018
66
April, 2019
53
March, 2020
47
October, 2018
45
November, 2019
40
May, 2024
31
February, 2018
25
February, 2020
23
November, 2018
20
October, 2017
19
September, 2020
16
January, 2021
12
May, 2023
10
April, 2020
8
November, 2020
7
August, 2020
7
December, 2019
7
January, 2018
6
January, 2019
5
March, 2019
5
September, 2017
3
December, 2018
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
Available data
92
bed narrowPeak
64
xls
49
txt
33
bam
25
bigWig
16
tagAlign
8
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
160
Homo sapiens
Biosample type
123
tissue
cell line
35
in vitro differentiated cells
3
primary cell
Organ
120
kidney
5
connective tissue
3
epithelium
3
liver
2
pancreas
1
adipose tissue
Project
161
AMP
Genome assembly (visualization)
97
GRCh38
37
hg19
Lab
120
Katalin Susztak, Upenn
35
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
assay_title!
single cell RNA-seq
biosample_type!
cell line
month_released!
March, 2023
target.investigated_as!
control
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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