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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
18
ATAC-seq
8
ChIP-seq
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
523
Transcription
18
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
638
February, 2021
341
May, 2020
306
October, 2019
267
May, 2021
218
June, 2019
171
August, 2021
142
May, 2022
120
May, 2019
118
July, 2018
112
February, 2023
110
August, 2017
105
July, 2019
82
November, 2017
80
April, 2019
56
March, 2020
56
November, 2019
40
May, 2024
24
February, 2020
16
January, 2021
16
November, 2020
16
October, 2018
12
May, 2023
10
April, 2020
7
December, 2019
6
October, 2017
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
550
bam
532
tsv
529
bigWig
84
txt
fastq
23
bed narrowPeak
8
tagAlign
2
bed bed3
2
bed bed3+
Organism
638
Homo sapiens
Biosample type
539
tissue
96
cell line
in vitro differentiated cells
3
primary cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
skeleton
6
limb
3
kidney
2
liver
Project
638
AMP
Genome assembly (visualization)
548
hg19
546
GRCh38
Lab
638
AMP-T2D consortium
Audit category:
110
inconsistent ontology term
1
inconsistent replicate
assay_title!
single cell RNA-seq
biosample_type!
in vitro differentiated cells
files.file_type!
fastq
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
638 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
osteoblast
1
1
1
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