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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
79
ChIP-seq
19
RRBS
17
WGBS
5
Hi-C
Assay category
205
DNA accessibility
79
DNA binding
36
DNA methylation
5
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
27
July, 2019
20
August, 2017
16
November, 2018
10
October, 2019
1
November, 2020
Available data
2995
bam
2804
bigWig
1685
bed narrowPeak
1260
tsv
1083
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
145
txt
101
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
325
Homo sapiens
Biosample type
201
tissue
63
primary cell
61
cell line
in vitro differentiated cells
Organ
82
kidney
67
liver
43
brain
38
heart
37
limb
37
musculature of body
30
epithelium
21
vasculature
18
ureter
16
blood vessel
14
pancreas
12
connective tissue
5
eye
4
adipose tissue
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
325
AMP
Genome assembly (visualization)
285
hg19
284
GRCh38
Lab
325
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
single cell RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
325 results
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DNase-seq
ChIP-seq
RRBS
WGBS
Hi-C
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
1
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
1
2
1
+ See 19 more…
cell line
HepG2
58
1
Panc1
1
1
See all biosamples
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