Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
119
total RNA-seq
single cell RNA-seq
26
ATAC-seq
4
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
147
DNA binding
119
Transcription
31
DNA accessibility
4
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
37
October, 2018
11
September, 2017
7
November, 2018
4
October, 2017
2
July, 2018
Available data
581
bam
530
bigWig
330
tsv
301
fastq
194
bed narrowPeak
91
bigBed narrowPeak
29
bed bed3+
19
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
hdf5
Organism
294
Homo sapiens
Biosample type
181
tissue
120
primary cell
Organ
450
liver
301
pancreas
103
epithelium
60
blood
60
bodily fluid
43
adipose tissue
43
connective tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
301
AMP
Genome assembly (visualization)
271
GRCh38
269
hg19
Lab
301
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
301 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
91
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
primary cell
pancreatic beta cell
13
10
7
pancreatic alpha cell
13
10
6
pancreatic endocrine cell
23
pancreatic ductal cell
13
4
4
pancreatic acinar cell
8
4
5
Download