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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
70
DNA accessibility
67
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
639
February, 2021
400
November, 2017
341
May, 2020
314
August, 2017
270
October, 2019
246
May, 2021
198
June, 2019
165
August, 2021
136
February, 2023
120
July, 2018
115
May, 2019
92
July, 2019
87
November, 2018
86
May, 2022
80
April, 2019
74
October, 2018
51
December, 2017
50
March, 2020
40
May, 2024
40
November, 2019
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
12
May, 2023
11
September, 2018
10
April, 2020
10
November, 2020
6
September, 2017
5
March, 2019
5
March, 2023
4
January, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
78
bed narrowPeak
64
xls
49
txt
22
bigWig
18
tsv
8
bam
2
bedpe bed3+
2
hic
1
vcf
Organism
164
Homo sapiens
Biosample type
123
tissue
42
cell line
in vitro differentiated cells
Organ
122
kidney
35
liver
8
embryo
epithelium
4
pancreas
1
adipose tissue
1
connective tissue
Project
165
AMP
Genome assembly (visualization)
72
GRCh38
24
hg19
Lab
120
Katalin Susztak, Upenn
36
Bing Ren, UCSD
9
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
skin of body
BIOSAMPLE
ASSAY
165 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
64
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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