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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ATAC-seq
96
total RNA-seq
95
ChIP-seq
single cell RNA-seq
26
snATAC-seq
10
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
160
DNA accessibility
100
Transcription
95
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
31
broad histone mark
28
transcription factor
27
narrow histone mark
14
control
11
RNA binding protein
5
nucleotide modification
Date released
156
August, 2021
64
May, 2022
49
May, 2021
40
May, 2024
23
February, 2023
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
5
March, 2019
4
March, 2023
1
October, 2017
Available data
156
bed narrowPeak
80
bigWig
64
xls
55
txt
26
fastq
25
bam
10
tsv
3
hic
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
376
Homo sapiens
Biosample type
primary cell
285
tissue
47
cell line
47
in vitro differentiated cells
2
stem cell
Organ
133
kidney
71
liver
69
pancreas
40
heart
10
lung
6
epithelium
1
thymus
Project
335
AMP
32
T1D
10
LungMap
4
community
Genome assembly (visualization)
118
GRCh38
63
hg19
Lab
AMP-T2D consortium
131
Katalin Susztak, Upenn
104
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
Struan F.A. Grant, CHOP
month_released!
October, 2018
BIOSAMPLE
ASSAY
381 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
MeRIP-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
tissue
kidney
75
49
6
1
islet of Langerhans
34
12
6
4
2
left cardiac atrium
40
liver
20
20
lung
10
+ See 2 more…
cell line
HepG2
9
18
2
1
1
EndoC_BH1
6
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
5
37
stem cell
SB Ad3.1
1
1
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