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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
129
DNA binding
74
DNA accessibility
69
Transcription
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
66
February, 2021
57
April, 2019
40
May, 2024
35
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
214
bigWig
199
bam
185
bed narrowPeak
88
bigBed narrowPeak
72
tsv
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
287
Homo sapiens
Biosample type
220
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
776
liver
645
connective tissue
593
pancreas
489
adipose tissue
287
heart
265
brain
254
kidney
193
blood vessel
193
vasculature
158
bone element
137
artery
122
limb
118
epithelium
81
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
287
AMP
Genome assembly (visualization)
256
GRCh38
178
hg19
Lab
247
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
single cell RNA-seq
biosample_type!
primary cell
month_released!
August, 2022
BIOSAMPLE
ASSAY
287 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
3
2
3
4
1
1
1
coronary artery
5
1
36
2
left cardiac atrium
40
1
heart
14
4
18
1
1
1
heart right ventricle
13
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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