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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
single cell RNA-seq
21
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
96
Transcription
21
DNA accessibility
Date released
107
February, 2023
101
May, 2022
94
May, 2021
58
May, 2020
51
February, 2021
47
November, 2017
43
August, 2021
33
August, 2017
25
October, 2019
16
September, 2020
15
March, 2020
10
December, 2017
9
July, 2019
9
November, 2019
8
February, 2018
8
January, 2021
8
June, 2019
7
November, 2020
5
March, 2023
4
November, 2018
4
October, 2022
3
January, 2019
1
August, 2018
1
December, 2018
1
May, 2019
Available data
95
fastq
12
tsv
bigWig
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
txt
2
bed narrowPeak
Organism
122
Homo sapiens
Biosample type
104
primary cell
tissue
13
in vitro differentiated cells
6
cell line
Organ
54
epithelium
54
pancreas
13
connective tissue
Project
92
HPAP
26
AMP
5
T1D
Genome assembly (visualization)
9
hg19
Lab
92
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
tissue
files.file_type!
bigWig
BIOSAMPLE
ASSAY
123 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
cell line
EndoC_BH1
3
2
1
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