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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
48
DNA binding
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
control
12
narrow histone mark
12
transcription factor
11
broad histone mark
2
RNA binding protein
Date released
324
November, 2017
224
May, 2021
127
August, 2017
102
May, 2020
101
May, 2022
98
February, 2023
66
August, 2021
64
October, 2019
61
November, 2018
55
June, 2019
51
February, 2021
46
December, 2017
46
September, 2018
28
December, 2018
24
February, 2018
20
November, 2019
19
September, 2020
18
January, 2019
13
July, 2019
8
January, 2021
8
November, 2020
7
August, 2020
7
March, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
1
August, 2018
Available data
54
bam
51
bigWig
46
bed narrowPeak
24
tagAlign
tsv
5
bed bed3+
4
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
vcf
Organism
71
Homo sapiens
Biosample type
tissue
35
in vitro differentiated cells
27
cell line
9
primary cell
Organ
26
liver
11
epithelium
7
kidney
4
connective tissue
2
pancreas
Project
71
AMP
Genome assembly (visualization)
48
hg19
30
GRCh38
Lab
42
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
71 results
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Clear Filters
ChIP-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
kidney epithelial cell
5
hepatocyte
4
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