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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
27
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
418
DNA binding
52
DNA accessibility
Target of assay
337
transcription factor
81
recombinant protein
76
histone
76
histone modification
70
RNA binding protein
38
broad histone mark
38
narrow histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
42
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1371
bam
1280
bigWig
844
fastq
822
bed narrowPeak
470
bigBed narrowPeak
422
tsv
160
tagAlign
101
zippedFastqFolder
98
bed broadPeak
98
bigBed broadPeak
60
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
tar
4
txt
3
cool
2
hdf5
2
ibed
1
vcf
Organism
470
Homo sapiens
Biosample type
tissue
355
cell line
98
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
brain
9
musculature of body
6
heart
3
eye
Project
470
AMP
Genome assembly (visualization)
459
hg19
432
GRCh38
Lab
470
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_title!
single cell RNA-seq
biosample_type!
tissue
organ_slims!
brain
BIOSAMPLE
ASSAY
470 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 19 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
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