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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1341
ChIP-seq
1001
total RNA-seq
289
ATAC-seq
single cell RNA-seq
162
DNase-seq
87
RNA microarray
30
pCHi-C
28
WGBS
28
snATAC-seq
20
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1341
DNA binding
1019
Transcription
483
DNA accessibility
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Target of assay
639
histone modification
638
histone
455
transcription factor
322
broad histone mark
316
narrow histone mark
247
control
93
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
635
February, 2021
397
November, 2017
284
August, 2017
272
October, 2019
May, 2020
167
August, 2021
145
June, 2019
120
July, 2018
115
May, 2019
100
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
61
May, 2021
56
November, 2019
51
March, 2020
48
December, 2017
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
6
September, 2017
5
March, 2019
3
January, 2018
2
December, 2019
2
March, 2023
1
August, 2022
1
October, 2022
Available data
2272
bam
2100
bigWig
1343
bed narrowPeak
942
tsv
898
bigBed narrowPeak
798
fastq
254
bed broadPeak
217
bigBed broadPeak
208
tagAlign
190
bed bed3+
145
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
3034
Homo sapiens
Biosample type
2386
tissue
754
primary cell
661
cell line
392
in vitro differentiated cells
10
stem cell
Organ
591
pancreas
567
liver
547
connective tissue
488
adipose tissue
286
heart
265
brain
254
kidney
193
blood vessel
193
vasculature
158
bone element
137
artery
122
limb
94
epithelium
81
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
ureter
16
skeleton
11
lung
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2995
AMP
40
T1D
10
LungMap
2
community
Genome assembly (visualization)
2137
GRCh38
2091
hg19
Lab
2715
AMP-T2D consortium
131
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
183
inconsistent ontology term
28
inconsistent control
4
audit script error
1
inconsistent replicate
Audit category:
39
missing controlled_by
Audit category:
32
inconsistent control read length
8
inconsistent control run_type
2
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
May, 2020
organ_slims!
ureter
BIOSAMPLE
ASSAY
3047 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
...and 3 more
tissue
islet of Langerhans
71
292
68
1
4
7
3
1
4
1
adipose tissue
2
382
3
1
3
kidney
27
49
75
13
6
1
1
1
liver
95
24
20
2
1
3
1
1
1
bone element
84
+ See 167 more…
cell line
HepG2
378
14
1
1
1
2
2
EndoC_BH1
15
33
19
1
6
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 14 more…
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