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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
1
ATAC-seq
1
Hi-C
1
WGBS
1
total RNA-seq
Assay category
73
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
58
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
5
control
4
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
76
bam
69
bigWig
68
bed narrowPeak
61
fastq
56
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
77
Homo sapiens
Biosample type
77
cell line
66
tissue
5
in vitro differentiated cells
Organ
46
liver
16
epithelium
16
pancreas
15
blood
15
bodily fluid
Project
77
AMP
Genome assembly (visualization)
70
GRCh38
68
hg19
Lab
77
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
single cell RNA-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
WGBS
total RNA-seq
cell line
HepG2
45
1
EndoC_BH1
13
1
1
1
GM12878
15
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