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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
39
total RNA-seq
27
snATAC-seq
24
ChIP-seq
1
DNase-seq
1
RRBS
Assay category
39
Transcription
28
DNA accessibility
24
DNA binding
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
4
control
1
chromatin remodeller
Date released
39
February, 2023
27
February, 2021
17
August, 2017
9
November, 2017
Available data
392
bigWig
385
bam
224
bed narrowPeak
136
tsv
100
tagAlign
92
fastq
84
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
21
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
92
Homo sapiens
Biosample type
427
cell line
164
tissue
141
in vitro differentiated cells
92
primary cell
4
stem cell
Organ
pancreas
172
epithelium
9
brain
6
vasculature
3
blood vessel
Project
66
HPAP
26
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
66
Klaus Kaestner, Upenn
26
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
single cell RNA-seq
organ_slims!
eye
pancreas
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
snATAC-seq
ChIP-seq
DNase-seq
RRBS
primary cell
exocrine cell
39
Langerhans cell
27
skeletal muscle myoblast
15
1
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
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