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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
6
DNase-seq
2
ATAC-seq
single cell RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
12
DNA binding
11
Transcription
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
Available data
32
bam
28
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
11
tsv
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
34
Homo sapiens
Biosample type
547
tissue
97
in vitro differentiated cells
34
primary cell
1
stem cell
Organ
336
epithelium
272
pancreas
37
vasculature
36
kidney
34
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
34
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
34
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
assay_title!
single cell RNA-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
July, 2018
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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