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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
226
ChIP-seq
197
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
283
DNA accessibility
249
Transcription
226
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
19
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
August, 2017
55
June, 2019
36
February, 2021
34
October, 2019
28
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
467
bigWig
451
bam
262
bed narrowPeak
223
fastq
170
tsv
101
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
842
Homo sapiens
Biosample type
2303
tissue
842
primary cell
662
cell line
324
in vitro differentiated cells
10
stem cell
Organ
307
epithelium
231
pancreas
37
vasculature
36
kidney
35
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
398
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
481
hg19
394
GRCh38
Lab
363
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
assay_title!
single cell RNA-seq
month_released!
April, 2020
August, 2017
BIOSAMPLE
ASSAY
842 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
34
31
1
pancreatic beta cell
21
22
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
4
33
2
1
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