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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
234
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
285
DNA accessibility
274
DNA binding
234
Transcription
49
DNA methylation
6
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
30
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
47
June, 2019
36
February, 2021
34
October, 2019
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
488
bigWig
486
bam
289
bed narrowPeak
281
fastq
155
tsv
103
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
30
bed bed3+
6
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
865
Homo sapiens
Biosample type
2320
tissue
865
primary cell
596
cell line
390
in vitro differentiated cells
10
stem cell
Organ
323
epithelium
272
pancreas
32
vasculature
29
kidney
27
blood vessel
27
connective tissue
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
heart
4
eye
1
bone element
1
bone marrow
Project
421
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
495
hg19
415
GRCh38
Lab
386
AMP-T2D consortium
239
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
month_released!
August, 2018
July, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
865 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
1
pancreatic beta cell
13
21
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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