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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
RRBS
7
DNase-seq
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
264
DNA accessibility
249
Transcription
248
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
24
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
June, 2019
36
February, 2021
34
October, 2019
28
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
466
bigWig
454
bam
281
fastq
248
bed narrowPeak
170
tsv
101
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
843
Homo sapiens
Biosample type
2314
tissue
843
primary cell
661
cell line
392
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
269
pancreas
33
vasculature
29
blood vessel
23
kidney
22
vein
18
connective tissue
13
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
402
AMP
236
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
485
hg19
389
GRCh38
Lab
367
AMP-T2D consortium
239
Kyle Gaulton, UCSD
236
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
audit script error
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
single cell RNA-seq
month_released!
July, 2018
June, 2019
October, 2022
BIOSAMPLE
ASSAY
843 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
31
pancreatic beta cell
13
21
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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