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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
868
ChIP-seq
258
ATAC-seq
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1047
Transcription
868
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
589
histone modification
588
histone
305
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
258
August, 2017
234
October, 2019
193
May, 2020
123
August, 2021
120
July, 2018
115
May, 2019
94
February, 2023
80
April, 2019
77
July, 2019
76
November, 2017
74
October, 2018
65
May, 2022
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
19
October, 2017
17
November, 2018
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
1901
bam
1766
bigWig
984
bed narrowPeak
966
tsv
561
bigBed narrowPeak
371
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2376
Homo sapiens
Biosample type
2379
tissue
852
primary cell
603
cell line
391
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
485
adipose tissue
479
pancreas
357
liver
229
brain
193
heart
167
kidney
158
bone element
122
blood vessel
122
vasculature
86
limb
67
artery
53
eye
41
nerve
36
musculature of body
24
spleen
16
skeleton
15
epithelium
11
lung
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2338
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1662
GRCh38
1553
hg19
Lab
2096
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
single cell RNA-seq
files.file_type!
bed broadPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
2379 results
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total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
61
66
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
3
1
1
1
1
kidney
49
27
75
6
1
1
1
bone element
84
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