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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
21
total RNA-seq
4
WGBS
1
DNase-seq
1
Hi-C
1
RRBS
1
pCHi-C
single cell RNA-seq
Assay category
66
DNA binding
21
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
Target of assay
46
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
36
August, 2017
23
May, 2020
20
May, 2022
12
December, 2017
2
March, 2020
1
February, 2020
1
July, 2019
Available data
288
bam
bigWig
154
tsv
113
bed narrowPeak
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
95
Homo sapiens
Biosample type
95
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
144
kidney
132
pancreas
100
bone element
95
liver
66
connective tissue
65
adipose tissue
63
brain
63
heart
57
blood vessel
57
vasculature
53
eye
44
artery
31
limb
24
musculature of body
16
skeleton
15
epithelium
12
nerve
11
lung
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
75
AMP-T2D consortium
20
Karen Mohlke, UNC
assay_title!
single cell RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
pCHi-C
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
1
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