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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
29
ATAC-seq
18
WGBS
10
DNase-seq
9
RRBS
single cell RNA-seq
2
FAIRE-seq
Assay category
220
DNA binding
97
Transcription
41
DNA accessibility
27
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
14
July, 2019
7
December, 2018
7
January, 2019
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1901
bam
1766
bigWig
984
bed narrowPeak
967
tsv
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
0
hdf5
Organism
378
Homo sapiens
Biosample type
428
cell line
385
tissue
294
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
209
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
13
brain
7
heart
3
musculature of body
1
blood vessel
1
kidney
1
limb
1
pericardium
1
vasculature
Project
385
AMP
Genome assembly (visualization)
294
hg19
282
GRCh38
Lab
359
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
1
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