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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
907
ChIP-seq
185
ATAC-seq
178
DNase-seq
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
997
Transcription
907
DNA binding
389
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
November, 2020
3
August, 2021
2
December, 2019
2
January, 2018
1
August, 2022
May, 2023
Available data
1901
bam
1766
bigWig
967
tsv
920
bed narrowPeak
561
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
95
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2452
Homo sapiens
Biosample type
2461
tissue
895
primary cell
656
cell line
392
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
495
pancreas
487
adipose tissue
360
liver
265
brain
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
104
kidney
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2420
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1777
GRCh38
1747
hg19
Lab
2311
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2023
November, 2020
BIOSAMPLE
ASSAY
2461 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
4
7
3
1
1
adipose tissue
381
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
bone element
84
bone tissue
58
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