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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
576
total RNA-seq
246
ATAC-seq
176
DNase-seq
single cell RNA-seq
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
2
RNA microarray
Assay category
833
DNA binding
590
Transcription
454
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
227
August, 2017
193
May, 2020
162
June, 2019
122
August, 2021
120
July, 2018
115
May, 2019
February, 2021
93
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2022
1
January, 2018
Available data
1395
bam
1285
bigWig
963
bed narrowPeak
551
bigBed narrowPeak
507
tsv
328
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
64
xls
60
txt
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1947
Homo sapiens
Biosample type
1955
tissue
833
primary cell
566
cell line
277
in vitro differentiated cells
9
stem cell
Organ
499
pancreas
360
liver
265
brain
232
kidney
220
heart
127
blood vessel
127
vasculature
116
limb
connective tissue
102
adipose tissue
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
15
epithelium
11
lung
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1914
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1365
GRCh38
1259
hg19
Lab
1670
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
February, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1955 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
70
292
68
1
7
4
3
1
1
4
liver
145
167
20
2
1
3
1
1
1
kidney
27
49
75
13
6
1
1
1
body of pancreas
35
3
4
4
2
2
heart left ventricle
35
3
2
3
1
4
1
1
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