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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
813
ChIP-seq
258
ATAC-seq
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1047
Transcription
813
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
261
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
111
May, 2019
94
February, 2023
82
November, 2017
77
July, 2019
74
April, 2019
65
May, 2022
59
October, 2018
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
November, 2018
17
December, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
January, 2019
6
September, 2017
5
March, 2019
4
December, 2018
November, 2020
2
December, 2019
January, 2018
1
August, 2022
Available data
1812
bam
1671
bigWig
967
tsv
909
bed narrowPeak
496
bigBed narrowPeak
292
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2488
Homo sapiens
Biosample type
2497
tissue
885
primary cell
339
in vitro differentiated cells
294
cell line
9
stem cell
Organ
529
connective tissue
478
pancreas
470
adipose tissue
321
liver
265
brain
234
kidney
208
heart
158
bone element
124
blood vessel
124
vasculature
122
limb
80
musculature of body
70
artery
56
eye
43
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2456
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1760
GRCh38
1659
hg19
Lab
2221
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
4
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
January, 2018
November, 2020
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
2497 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
64
68
1
7
4
3
1
1
adipose tissue
382
2
2
3
1
liver
167
108
20
2
3
1
1
1
1
kidney
49
26
75
13
6
1
1
1
bone element
84
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