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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
831
ChIP-seq
447
total RNA-seq
252
ATAC-seq
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
14
small RNA-seq
11
RRBS
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
831
DNA binding
461
Transcription
460
DNA accessibility
32
DNA methylation
9
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
227
August, 2017
193
May, 2020
162
June, 2019
122
August, 2021
July, 2018
115
May, 2019
95
February, 2021
93
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
40
May, 2021
40
May, 2024
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2022
1
January, 2018
Available data
1278
bam
1158
bigWig
969
bed narrowPeak
551
bigBed narrowPeak
367
tsv
326
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
144
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1883
Homo sapiens
Biosample type
1891
tissue
865
primary cell
651
cell line
287
in vitro differentiated cells
6
stem cell
Organ
connective tissue
487
adipose tissue
370
pancreas
357
liver
263
brain
235
kidney
213
heart
158
bone element
124
blood vessel
124
vasculature
122
limb
76
musculature of body
71
artery
56
eye
43
nerve
24
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
1854
AMP
27
T1D
10
LungMap
Genome assembly (visualization)
1248
GRCh38
1133
hg19
Lab
1606
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
July, 2018
March, 2020
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1891 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
166
20
2
3
1
1
islet of Langerhans
68
170
66
1
7
1
3
4
1
4
kidney
27
49
75
13
6
1
1
1
bone element
84
body of pancreas
35
3
4
4
2
2
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