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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
998
total RNA-seq
907
ChIP-seq
242
ATAC-seq
single cell RNA-seq
178
DNase-seq
86
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
998
Transcription
907
DNA binding
450
DNA accessibility
20
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
123
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
80
February, 2023
July, 2019
74
October, 2018
65
May, 2022
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1837
bam
1703
bigWig
965
bed narrowPeak
917
tsv
559
bigBed narrowPeak
371
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2496
Homo sapiens
Biosample type
2505
tissue
583
cell line
550
primary cell
368
in vitro differentiated cells
10
stem cell
Organ
537
connective tissue
493
pancreas
478
adipose tissue
352
liver
254
brain
231
kidney
200
heart
158
bone element
120
blood vessel
120
vasculature
117
limb
74
musculature of body
70
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2464
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1792
GRCh38
1677
hg19
Lab
2220
AMP-T2D consortium
131
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2505 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
1
7
4
3
4
1
adipose tissue
382
2
3
1
3
liver
165
145
20
2
1
3
1
1
kidney
49
27
75
13
6
1
bone element
84
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