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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
880
ChIP-seq
147
ATAC-seq
single cell RNA-seq
110
DNase-seq
85
RNA microarray
27
WGBS
25
pCHi-C
21
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
970
Transcription
880
DNA binding
281
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
536
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
95
June, 2019
94
February, 2023
82
November, 2017
74
October, 2018
73
July, 2019
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
August, 2021
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1779
bam
1655
bigWig
960
tsv
793
bed narrowPeak
474
bigBed narrowPeak
347
fastq
238
tagAlign
145
bed broadPeak
136
bed bed3+
108
bigBed broadPeak
88
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2288
Homo sapiens
Biosample type
2297
tissue
764
primary cell
643
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
488
adipose tissue
475
pancreas
320
liver
265
brain
kidney
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
80
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2256
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1688
GRCh38
1618
hg19
Lab
2207
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
month_released!
May, 2022
organ_slims!
kidney
BIOSAMPLE
ASSAY
2297 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
286
71
50
1
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
147
145
2
3
1
1
1
1
bone element
84
bone tissue
58
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