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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
966
total RNA-seq
757
ChIP-seq
146
ATAC-seq
85
RNA microarray
83
DNase-seq
single cell RNA-seq
22
pCHi-C
22
snATAC-seq
19
WGBS
14
small RNA-seq
12
Hi-C
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
980
Transcription
757
DNA binding
254
DNA accessibility
28
DNA methylation
12
3D chromatin structure
Target of assay
513
histone modification
512
histone
276
narrow histone mark
236
broad histone mark
165
control
81
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
536
February, 2021
284
August, 2017
230
October, 2019
193
May, 2020
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
68
June, 2019
65
May, 2022
59
February, 2023
53
July, 2019
48
December, 2017
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
August, 2021
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1671
bam
1518
bigWig
941
tsv
658
bed narrowPeak
386
bigBed narrowPeak
371
fastq
238
tagAlign
118
bed broadPeak
110
bed bed3+
95
txt
81
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
7
bedpe bed3+
7
hic
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2133
Homo sapiens
Biosample type
2142
tissue
852
primary cell
577
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
360
liver
265
brain
kidney
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2101
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
1544
hg19
1497
GRCh38
Lab
2028
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
organ_slims!
heart
kidney
BIOSAMPLE
ASSAY
2142 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
RNA microarray
DNase-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
3
1
1
1
bone element
84
bone tissue
58
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