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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
4
DNase-seq
single cell RNA-seq
2
total RNA-seq
1
pCHi-C
Assay category
41
DNA accessibility
28
DNA binding
2
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
5
May, 2019
2
February, 2020
2
June, 2019
1
July, 2019
1
March, 2020
Available data
62
bed narrowPeak
34
bam
27
bigWig
25
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
tsv
Organism
72
Homo sapiens
Biosample type
72
tissue
66
cell line
2
primary cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
360
liver
265
brain
235
kidney
220
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
62
GRCh38
27
hg19
Lab
72
AMP-T2D consortium
assay_title!
single cell RNA-seq
organ_slims!
thymus
BIOSAMPLE
ASSAY
72 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
1
tibial artery
1
23
2
1
esophagus
1
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