Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • 293ChIP-seq
  • single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 443DNA accessibility
  • 293DNA binding
  • 249Transcription
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 232histone
  • 232histone modification
  • 123broad histone mark
  • 109narrow histone mark
  • 37control
  • 29transcription factor
  • 11RNA binding protein
  • 5nucleotide modification
Date released
  • 204February, 2023
  • 164August, 2021
  • 142May, 2022
  • 129August, 2017
  • 125February, 2021
  • 122May, 2021
  • 64October, 2019
  • 58May, 2020
  • 48March, 2020
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19September, 2020
  • 16January, 2021
  • 14November, 2017
  • 12May, 2023
  • 10April, 2020
  • 10November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2December, 2019
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • bam
  • 3063bigWig
  • 1817bed narrowPeak
  • 1389tsv
  • 1224fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 148txt
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1268Homo sapiens
Biosample type
  • 696tissue
  • 392primary cell
  • 101in vitro differentiated cells
  • 80cell line
  • 7stem cell
Organ
  • 257pancreas
  • 207epithelium
  • 146kidney
  • 109liver
  • 93bone element
  • 91connective tissue
  • 89heart
  • 54eye
  • 49adipose tissue
  • 45vasculature
  • 44blood vessel
  • 43brain
  • 38musculature of body
  • 37artery
  • 11lung
  • 9blood
  • 9bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 964AMP
  • 239HPAP
  • 58T1D
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 215hg19
  • 168GRCh38
  • 5hg18
Lab
  • 614AMP-T2D consortium
  • 239Klaus Kaestner, Upenn
  • 139Kyle Gaulton, UCSD
  • 131Katalin Susztak, Upenn
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 139inconsistent ontology term
  • 35audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
assay_title!
  • single cell RNA-seq
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1276 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney7549611
islet of Langerhans30412674314
bone element84
liver2023203111
left cardiac atrium40
primary cell
pancreatic alpha cell2942311
Langerhans cell48
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell63751
adipocyte81411
chondrocyte5
cardiomyocytes (cardiac muscle cell)22
immature adipocyte22
cell line
HepG2199222
EndoC_BH118162321
EndoC-BH1
HEK293T2
GM128781
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego