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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
74
Transcription
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
663
February, 2021
400
November, 2017
371
May, 2021
349
August, 2017
341
May, 2020
273
October, 2019
205
August, 2021
148
February, 2023
120
July, 2018
115
May, 2019
90
July, 2019
85
May, 2022
80
April, 2019
78
November, 2018
74
October, 2018
60
December, 2017
58
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
16
January, 2021
12
May, 2023
11
September, 2018
10
April, 2020
9
November, 2020
8
January, 2018
5
March, 2019
5
March, 2023
4
September, 2017
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
0
September, 2020
Available data
103
bed narrowPeak
64
xls
49
txt
45
bam
44
bigWig
25
tsv
20
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
204
Homo sapiens
Biosample type
123
tissue
42
cell line
40
in vitro differentiated cells
Organ
122
kidney
32
liver
23
pancreas
epithelium
8
embryo
3
connective tissue
1
adipose tissue
Project
205
AMP
Genome assembly (visualization)
102
GRCh38
55
hg19
Lab
120
Katalin Susztak, Upenn
47
AMP-T2D consortium
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
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