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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
17
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
22
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
66
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
705
pancreas
638
liver
593
connective tissue
457
adipose tissue
343
epithelium
182
kidney
173
heart
159
bone element
146
vasculature
144
blood vessel
115
artery
68
blood
68
bodily fluid
61
brain
54
eye
37
limb
29
musculature of body
25
embryo
18
spleen
17
nerve
16
skeleton
11
lung
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
37
AMP-T2D consortium
assay_title!
single cell RNA-seq
files.file_type!
bed broadPeak
lab.title!
Maike Sander, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
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