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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
62
total RNA-seq
52
ATAC-seq
4
Hi-C
single cell RNA-seq
1
WGBS
Assay category
77
DNA binding
62
Transcription
52
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
histone
51
histone modification
34
broad histone mark
21
control
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
72
February, 2021
65
October, 2019
35
February, 2023
12
May, 2019
8
July, 2019
4
February, 2020
Available data
190
bam
155
bigWig
145
bed narrowPeak
89
bigBed narrowPeak
62
tsv
38
bed bed3+
bed broadPeak
38
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
196
Homo sapiens
Biosample type
128
tissue
66
cell line
2
primary cell
Organ
845
pancreas
727
liver
670
connective tissue
488
adipose tissue
432
epithelium
270
heart
236
brain
213
vasculature
212
kidney
211
blood vessel
159
bone element
135
artery
86
limb
69
blood
69
bodily fluid
57
eye
49
musculature of body
41
nerve
37
embryo
24
spleen
18
vein
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
165
GRCh38
130
hg19
Lab
196
AMP-T2D consortium
assay_title!
single cell RNA-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
tissue
coronary artery
5
1
36
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
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