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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
40
ChIP-seq
18
snATAC-seq
16
ATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
40
DNA binding
34
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
120
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
6
May, 2022
Available data
220
bigWig
204
bam
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
210
Homo sapiens
Biosample type
124
primary cell
47
in vitro differentiated cells
34
tissue
5
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
connective tissue
1
thymus
Project
151
T1D
59
AMP
Genome assembly (visualization)
106
hg19
96
GRCh38
Lab
1550
AMP-T2D consortium
239
Klaus Kaestner, Upenn
210
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
assay_title!
single cell RNA-seq
files.file_type!
bed narrowPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
11
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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